Sokurenko, Evgeni V: search on Z-Library

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1

Single-Molecule Constant-Force (Force-Clamp) AFM Measurements Confirm Catch-Bonds and Multiple Binding States in Bacterial Adhesin FimH

Forero-Shelton, Manu, Aprikian, Pavel, Sokurenko, Evgeni, Thomas, Wendy E., Vogel, Viola

Journal:

Biophysical Journal

Year:

2009

Language:

english

File:

PDF, 32 KB

english, 2009

2

Biophysics of Catch Bonds

Thomas, Wendy E., Vogel, Viola, Sokurenko, Evgeni

Journal:

Annual Review of Biophysics

Year:

2008

Language:

english

File:

PDF, 1.64 MB

english, 2008

3

Epidemiology and Antimicrobial Resistance Characteristics of the Sequence Type 131-H30 Subclone Among Extraintestinal Escherichia coli Collected From US Children

Miles-Jay, Arianna, Weissman, Scott J, Adler, Amanda L, Tchesnokova, Veronika, Sokurenko, Evgeni V, Baseman, Janet G, Zerr, Danielle M

Journal:

Clinical Infectious Diseases

Year:

2018

Language:

english

File:

PDF, 176 KB

english, 2018

4

Clonal analysis reveals high rate of structural mutations in fimbrial adhesins of extraintestinal pathogenic Escherichia coli

Scott J. Weissman, Sujay Chattopadhyay, Pavel Aprikian, Mana Obata-Yasuoka, Yuliya Yarova-Yarovaya, Ann Stapleton, William Ba-Thein, Daniel Dykhuizen, James R. Johnson, Evgeni V. Sokurenko

Journal:

Molecular Microbiology

Year:

2006

Language:

english

File:

PDF, 284 KB

english, 2006

5

Donor strand exchange and conformational changes during E. coli fimbrial formation

Isolde Le Trong, Pavel Aprikian, Brian A. Kidd, Wendy E. Thomas, Evgeni V. Sokurenko, Ronald E. Stenkamp

Journal:

Journal of Structural Biology

Year:

2010

Language:

english

File:

PDF, 1000 KB

english, 2010

6

Haplotype Diversity in “Source-Sink” Dynamics ofEscherichia coliUrovirulence

Sujay Chattopadhyay, Michael Feldgarden, Scott J. Weissman, Daniel E. Dykhuizen, Gerald van Belle, Evgeni V. Sokurenko

Journal:

Journal of Molecular Evolution

Year:

2007

Language:

english

File:

PDF, 264 KB

english, 2007

7

Selection for functional diversity drives accumulation of point mutations in Dr adhesins of Escherichia coli

Natalia Korotkova, Sujay Chattopadhyay, Tami A. Tabata, Viktoria Beskhlebnaya, Vladimir Vigdorovich, Brett K. Kaiser, Roland K. Strong, Daniel E. Dykhuizen, Evgeni V. Sokurenko, Steve L. Moseley

Journal:

Molecular Microbiology

Year:

2007

Language:

english

File:

PDF, 616 KB

english, 2007

8

[Methods in Enzymology] Adhesion of Microbial Pathogens Volume 253 || [41] Bacterial adhesion measured by growth of adherent organisms

Sokurenko, Evgeni V

Year:

1995

Language:

english

File:

PDF, 529 KB

english, 1995

9

The cysteine bond in the Escherichia coli FimH adhesin is critical for adhesion under flow conditions

Lina M. Nilsson, Olga Yakovenko, Veronika Tchesnokova, Wendy E. Thomas, Mark A. Schembri, Viola Vogel, Per Klemm, Evgeni V. Sokurenko

Journal:

Molecular Microbiology

Year:

2007

Language:

english

File:

PDF, 483 KB

english, 2007

10

Source–sink dynamics of virulence evolution

Sokurenko, Evgeni V., Gomulkiewicz, Richard, Dykhuizen, Daniel E.

Journal:

Nature Reviews Microbiology

Year:

2006

Language:

english

File:

PDF, 523 KB

english, 2006

11

Prevalence and persistence of Escherichia coli in the airways of cystic fibrosis patients—An unrecognized CF pathogen?

Barillova, Petra, Tchesnokova, Veronika, Dübbers, Angelika, Küster, Peter, Peters, Georg, Dobrindt, Ulrich, Sokurenko, Evgeni V., Kahl, Barbara C.

Journal:

International Journal of Medical Microbiology

Year:

2014

Language:

english

File:

PDF, 504 KB

english, 2014

12

A Catch-Bond Based Nanoadhesive Sensitive to Shear Stress

Forero, Manu, Thomas, Wendy E., Bland, Clint, Nilsson, Lina M., Sokurenko, Evgeni V., Vogel, Viola

Journal:

Year:

2004

Language:

english

File:

PDF, 150 KB

english, 2004

13

Uropathogenic Escherichia coli Metabolite-Dependent Quiescence and Persistence May Explain Antibiotic Tolerance during Urinary Tract Infection

Leatham-Jensen, Mary P., Mokszycki, Matthew E., Rowley, David C., Deering, Robert, Camberg, Jodi L., Sokurenko, Evgeni V., Tchesnokova, Veronika L., Frimodt-Møller, Jakob, Krogfelt, Karen A., Leth Nie

Journal:

Year:

2016

Language:

english

File:

PDF, 4.98 MB

english, 2016

14

ZPS: visualization of recent adaptive evolution of proteins

Sujay Chattopadhyay, Daniel E Dykhuizen, Evgeni V Sokurenko

Journal:

BMC Bioinformatics

Year:

2007

Language:

english

File:

PDF, 260 KB

english, 2007

15

Response from Sokurenko and Dykhuizen

Evgeni V Sokurenko, Daniel E Dykhuizen

Journal:

Trends in Microbiology

Year:

1999

Language:

english

File:

PDF, 97 KB

english, 1999

16

Pathogenic Adaptation of Escherichia coli by Natural Variation of the FimH Adhesin

Evgeni V. Sokurenko, Veronika Chesnokova, Daniel E. Dykhuizen, Itzhak Ofek, Xue-Ru Wu, Karen A. Krogfelt, Carsten Struve, Mark A. Schembri and David L. Hasty

Journal:

Proceedings of the National Academy of Sciences

Year:

1998

Language:

english

File:

PDF, 946 KB

english, 1998

17

Corrected Genome Annotations Reveal Gene Loss and Antibiotic Resistance as Drivers in the Fitness Evolution of Salmonella Typhimurium.

Paul, Sandip, Sokurenko, Evgeni V., Chattopadhyay, Sujay

Journal:

Journal of Bacteriology

Year:

2016

Language:

english

File:

PDF, 1.15 MB

english, 2016

18

Escherichia coli Sequence Type 131 H 30 Is the Main Driver of Emerging Extended-Spectrum-β-Lactamase-Producing E . coli at a Tertiary Care Center

Johnson, James R., Johnston, Brian, Thuras, Paul, Launer, Bryn, Sokurenko, Evgeni V., Miller, Loren G., Castanheira, Mariana

Journal:

Year:

2016

Language:

english

File:

PDF, 190 KB

english, 2016

19

Beyond Induced-Fit Receptor-Ligand Interactions: Structural Changes that Can Significantly Extend Bond Lifetimes

Lina M. Nilsson, Wendy E. Thomas, Evgeni V. Sokurenko, Viola Vogel

Journal:

Year:

2008

Language:

english

File:

PDF, 1.62 MB

english, 2008

20

Distinctive features of the biological catch bond in the jump-ramp force regime predicted by the two-pathway model

Pereverzev, Yuriy V., Prezhdo, Oleg V., Thomas, Wendy E., Sokurenko, Evgeni V.

Journal:

Physical Review E

Year:

2005

Language:

english

File:

PDF, 139 KB

english, 2005

21

Accelerated gene evolution through replication–transcription conflicts

Paul, Sandip, Million-Weaver, Samuel, Chattopadhyay, Sujay, Sokurenko, Evgeni, Merrikh, Houra

Journal:

Year:

2013

Language:

english

File:

PDF, 326 KB

english, 2013

22

Uncoiling Mechanics of Escherichia coli Type I Fimbriae Are Optimized for Catch Bonds

Forero, Manu, Yakovenko, Olga, Sokurenko, Evgeni V., Thomas, Wendy E., Vogel, Viola

Journal:

Year:

2006

Language:

english

File:

PDF, 515 KB

english, 2006

23

Synonymous and nonsynonymous distances help untangle convergent evolution and recombination

Chi, Peter B., Chattopadhyay, Sujay, Lemey, Philippe, Sokurenko, Evgeni V., Minin, Vladimir N.

Journal:

Statistical Applications in Genetics and Molecular Biology

Year:

2015

Language:

english

File:

PDF, 966 KB

english, 2015

24

Identification of amino acids in the Dr adhesin required for binding to decay-accelerating factor

Cristina P. Van Loy, Evgeni V. Sokurenko, Ram Samudrala, Steve L. Moseley

Journal:

Molecular Microbiology

Year:

2002

Language:

english

File:

PDF, 660 KB

english, 2002

25

Catch-Bond Mechanism of Force-Enhanced Adhesion: Counterintuitive, Elusive, but … Widespread?

Evgeni V. Sokurenko, Viola Vogel, Wendy E. Thomas

Journal:

Cell Host & Microbe

Year:

2008

Language:

english

File:

PDF, 494 KB

english, 2008

26

Regulation of Catch Binding by Allosteric Transitions

Pereverzev, Yuriy V., Prezhdo, Oleg V., Sokurenko, Evgeni V.

Journal:

Journal of Physical Chemistry B

Year:

2010

Language:

english

File:

PDF, 759 KB

english, 2010

27

Clonal identity of Escherichia coli as a predictive factor for recurrent cystitis

Sokurenko, Evgeni, Johnson, James R.

Journal:

Year:

2011

Language:

english

File:

PDF, 485 KB

english, 2011

28

Erratum for Johnson et al., Intensity and Mechanisms of Fluoroquinolone Resistance within the H 30 and H 30Rx Subclones of Escherichia coli Sequence Type 131 Compared with Other Fluoroquinolone-Resistant E. coli

Johnson, James R., Johnston, Brian, Kuskowski, Michael A., Sokurenko, Evgeni V., Tchesnokova, Veronika

Journal:

Antimicrobial Agents and Chemotherapy

Year:

2015

Language:

english

File:

PDF, 99 KB

english, 2015

29

Enterobacterial adhesins and the case for studying SNPs in bacteria

Scott J. Weissman, Steve L. Moseley, Daniel E. Dykhuizen, Evgeni V. Sokurenko

Journal:

Trends in Microbiology

Year:

2003

Language:

english

File:

PDF, 79 KB

english, 2003

30

RMSD analysis of structures of the bacterial protein FimH identifies five conformations of its lectin domain

Magala, Pearl, Klevit, Rachel E., Thomas, Wendy E., Sokurenko, Evgeni V., Stenkamp, Ronald E.

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2019

File:

PDF, 674 KB

2019

31

Catch-Bond Model Derived from Allostery Explains Force-Activated Bacterial Adhesion

Thomas, Wendy, Forero, Manu, Yakovenko, Olga, Nilsson, Lina, Vicini, Paolo, Sokurenko, Evgeni, Vogel, Viola

Journal:

Biophysical Journal

Year:

2006

Language:

english

File:

PDF, 364 KB

english, 2006

32

The Two-Pathway Model of the Biological Catch-Bond as a Limit of the Allosteric Model

Pereverzev, Yuriy V., Prezhdo, Eugenia, Sokurenko, Evgeni V.

Journal:

Biophysical Journal

Year:

2011

Language:

english

File:

PDF, 438 KB

english, 2011

33

The Two-Pathway Model for the Catch-Slip Transition in Biological Adhesion

Pereverzev, Yuriy V., Prezhdo, Oleg V., Forero, Manu, Sokurenko, Evgeni V., Thomas, Wendy E.

Journal:

Biophysical Journal

Year:

2005

Language:

english

File:

PDF, 168 KB

english, 2005

34

The Two-Pathway Model of the Biological Catch-Bond as a Limit of the Allosteric Model

Pereverzev, Yuriy, Prezhdo, Oleg, Sokurenko, Evgeni

Journal:

Biophysical Journal

Year:

2011

Language:

english

File:

PDF, 38 KB

english, 2011

35

Tracking recent adaptive evolution in microbial species using TimeZone

Chattopadhyay, Sujay, Paul, Sandip, Dykhuizen, Daniel E, Sokurenko, Evgeni V

Journal:

Bioentrepreneur

Year:

2013

Language:

english

File:

PDF, 1.25 MB

english, 2013

36

Clonal distribution and associated characteristics of Escherichia coli clinical and surveillance isolates from a military medical center

Manges, Amee R., Mende, Katrin, Murray, Clinton K., Johnston, Brian D., Sokurenko, Evgeni V., Tchesnokova, Veronika, Johnson, James R.

Journal:

Diagnostic Microbiology and Infectious Disease

Year:

2017

Language:

english

File:

PDF, 443 KB

english, 2017

37

Valency conversion in the type 1 fimbrial adhesin of Escherichia coli

Evgeni V. Sokurenko, Mark A. Schembri, Elena Trintchina, Kristian Kjærgaard, David L. Hasty, Per Klemm

Journal:

Molecular Microbiology

Year:

2001

Language:

english

File:

PDF, 1.36 MB

english, 2001

38

[Methods in Enzymology] Adhesion of Microbial Pathogens Volume 253 || [19] Assay for adhesion of host cells to immobilized bacteria

Sokurenko, Evgeni V

Year:

1995

Language:

english

File:

PDF, 1.24 MB

english, 1995

39

The Pandemic H 30 Subclone of Escherichia coli Sequence Type 131 (ST131) is Associated with Persistent Infections and Adverse Outcomes Independently from Its Multi-Drug Resistance and Associations with Compromised Hosts

Johnson, James R., Thuras, Paul, Johnston, Brian D., Weissman, Scott J., Limaye, Ajit P., Riddell, Kim, Scholes, Delia, Tchesnokova, Veronika, Sokurenko, Evgeni

Journal:

Clinical Infectious Diseases

Year:

2016

Language:

english

File:

PDF, 1.20 MB

english, 2016

40

MP25-17 RAPID QPCR TO IDENTIFY MULTI-DRUG RESISTANT E. COLI PRIOR TO PROSTATE BIOPSY

Liss, Michael, Otelly, Linda, Tchesnokova, Veronika, Sakamoto, Kyoko, Fierer, Joshua, Sokurenko, Evgeni

Journal:

The Journal of Urology

Year:

2015

Language:

english

File:

PDF, 41 KB

english, 2015

41

Pathoadaptive Mutations in Uropathogenic Escherichia coli

Sokurenko, Evgeni

Journal:

Microbiology Spectrum

Year:

2016

Language:

english

File:

PDF, 647 KB

english, 2016

42

SpyB, a Small Heme-Binding Protein, Affects the Composition of the Cell Wall in Streptococcus pyogenes

Edgar, Rebecca J., Chen, Jing, Kant, Sashi, Rechkina, Elena, Rush, Jeffrey S., Forsberg, Lennart S., Jaehrig, Bernhard, Azadi, Parastoo, Tchesnokova, Veronika, Sokurenko, Evgeni V., Zhu, Haining, Koro

Journal:

Frontiers in Cellular and Infection Microbiology

Year:

2016

Language:

english

File:

PDF, 2.20 MB

english, 2016

43

Molecular Characterization of the Escherichia coli FimH Adhesin

Schembri, Mark A., Kjaergaard, Kristian, Sokurenko, Evgeni V., Klemm, Per

Journal:

The Journal of Infectious Diseases

Year:

2001

Language:

english

File:

PDF, 140 KB

english, 2001

44

Allosteric Regulation Across a β-Sandwich Protein: How a Bacterial Adhesive Protein is Activated by Mechanical Force

Thomas, Wendy E., Le Trong, Isolde, Aprikian, Pavel, Forero, Manu, Kidd, Brian, Interlandi, Gianluca, Tchesnekova, Veronika, Yakovenko, Olga, Vogel, Viola, Stenkamp, Ron, Sokurenko, Evgeni

Journal:

Biophysical Journal

Year:

2009

Language:

english

File:

PDF, 37 KB

english, 2009

45

Footprint of Positive Selection in Treponema pallidum subsp. pallidum Genome Sequences Suggests Adaptive Microevolution of the Syphilis Pathogen

Giacani, Lorenzo, Chattopadhyay, Sujay, Centurion-Lara, Arturo, Jeffrey, Brendan M., Le, Hoavan T., Molini, Barbara J., Lukehart, Sheila A., Sokurenko, Evgeni V., Rockey, Daniel D., Picardeau, Mathieu

Journal:

PLoS Neglected Tropical Diseases

Year:

2012

Language:

english

File:

PDF, 1.01 MB

english, 2012

46

Rapid Identification of Rectal Multi-Drug Resistant E. coli Prior to Transrectal Prostate Biopsy

Tchesnokova, Veronika L., Otelly, Linda L., Sakamoto, Kyoko, Fierer, Joshua, Sokurenko, Evgeni, Liss, Michael A.

Journal:

Year:

2015

Language:

english

File:

PDF, 339 KB

english, 2015

47

Bacterial Adhesion to Target Cells Enhanced by Shear Force

Wendy E. Thomas, Elena Trintchina, Manu Forero, Viola Vogel, Evgeni V. Sokurenko

Journal:

Year:

2002

Language:

english

File:

PDF, 433 KB

english, 2002

48

Population Genetics of Bacteria: A Tribute to Thomas S. Whittamedited by Seth T. Walk and Peter C. H. Feng

Review by: Evgeni V. Sokurenko

Journal:

Quarterly Review of Biology

Year:

2013

Language:

english

File:

PDF, 90 KB

english, 2013

49

Development of a web tool for Escherichia coli sub-typing based on fimH alleles

Roer, Louise, Tchesnokova, Veronika, Allesøe, Rosa, Muradova, Mariya, Chattopadhyay, Sujay, Ahrenfeldt, Johanne, Thomsen, Martin C. F., Lund, Ole, Hansen, Frank, Hammerum, Anette M., Sokurenko, Evgeni

Journal:

Journal of Clinical Microbiology

Year:

2017

Language:

english

File:

PDF, 980 KB

english, 2017

50

CHTyper, a Web Tool for Subtyping of Extraintestinal Pathogenic Escherichia coli Based on the fumC and fimH Alleles

Roer, Louise, Johannesen, Thor Bech, Hansen, Frank, Stegger, Marc, Tchesnokova, Veronika, Sokurenko, Evgeni, Garibay, Natasha, Allesøe, Rosa, Thomsen, Martin C. F., Lund, Ole, Hasman, Henrik, Hammerum

Journal:

Journal of Clinical Microbiology

Year:

2018

Language:

english

File:

PDF, 130 KB

english, 2018

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